Thermal and geochemical influences on microbial biogeography in the hydrothermal sediments of Guaymas Basin, Gulf of California

Extreme thermal gradients and compressed metabolic zones limit the depth range of microbial colonization in hydrothermally active sediments at Guaymas Basin. We investigated the physicochemical characteristics of this ecosystem and their influence on microbial community structure. Temperature-related trends of δ13C values of methane and dissolved inorganic carbon from 36 sediment cores suggest in situ thermal limits for microbial anaerobic methane oxidation and organic carbon re-mineralization near 80°C and 100°C respectively. Temperature logging probes deposited in hydrothermal sediments for 8 days demonstrate substantial thermal fluctuations of up to 25°C. Putative anaerobic methanotroph (ANME) populations dominate the archaeal community, transitioning from ANME-1 archaea in warm surficial sediments towards ANME-1 Guaymas archaea as temperatures increase downcore. Since ANME archaea performing anaerobic oxidation of methane double on longer time scales (months) compared with relatively rapid in situ temperature fluctuations (hours to days), we conclude that ANME archaea possess a high tolerance for short-term shifts in the thermal regime

Size Doesn't Matter: Towards a More Inclusive Philosophy of Biology

notes: As the primary author, O’Malley drafted the paper, and gathered and analysed data (scientific papers and talks). Conceptual analysis was conducted by both authors.publication-status: Publishedtypes: ArticlePhilosophers of biology, along with everyone else, generally perceive life to fall into two broad categories, the microbes and macrobes, and then pay most of their attention to the latter. ‘Macrobe’ is the word we propose for larger life forms, and we use it as part of an argument for microbial equality. We suggest that taking more notice of microbes – the dominant life form on the planet, both now and throughout evolutionary history – will transform some of the philosophy of biology’s standard ideas on ontology, evolution, taxonomy and biodiversity. We set out a number of recent developments in microbiology – including biofilm formation, chemotaxis, quorum sensing and gene transfer – that highlight microbial capacities for cooperation and communication and break down conventional thinking that microbes are solely or primarily single-celled organisms. These insights also bring new perspectives to the levels of selection debate, as well as to discussions of the evolution and nature of multicellularity, and to neo-Darwinian understandings of evolutionary mechanisms. We show how these revisions lead to further complications for microbial classification and the philosophies of systematics and biodiversity. Incorporating microbial insights into the philosophy of biology will challenge many of its assumptions, but also give greater scope and depth to its investigations

Modeling microbial reaction rates in a submarine hydrothermal vent chimney wall

The fluids emanating from active submarine hydrothermal vent chimneys provide a window into subseafloor processes and, through mixing with seawater, are responsible for steep thermal and compositional gradients that provide the energetic basis for diverse biological communities. Although several models have been developed to better understand the dynamic interplay of seawater, hydrothermal fluid, minerals and microorganisms inside chimney walls, none provide a fully integrated approach to quantifying the biogeochemistry of these hydrothermal systems. In an effort to remedy this, a fully coupled biogeochemical reaction-transport model of a hydrothermal vent chimney has been developed that explicitly quantifies the rates of microbial catalysis while taking into account geochemical processes such as fluid flow, solute transport and oxidation–reduction reactions associated with fluid mixing as a function of temperature. The metabolisms included in the reaction network are methanogenesis, aerobic oxidation of hydrogen, sulfide and methane and sulfate reduction by hydrogen and methane. Model results indicate that microbial catalysis is generally fastest in the hottest habitable portion of the vent chimney (77–102 °C), and methane and sulfide oxidation peak near the seawater-side of the chimney. The fastest metabolisms are aerobic oxidation of H2 and sulfide and reduction of sulfate by H2 with maximum rates of 140, 900 and 800 pmol cm−3 d−1, respectively. The maximum rate of hydrogenotrophic methanogenesis is just under 0.03 pmol cm−3 d−1, the slowest of the metabolisms considered. Due to thermodynamic inhibition, there is no anaerobic oxidation of methane by sulfate (AOM). These simulations are consistent with vent chimney metabolic activity inferred from phylogenetic data reported in the literature. The model developed here provides a quantitative approach to describing the rates of biogeochemical transformations in hydrothermal systems and can be used to constrain the role of microbial activity in the deep subsurface

The temperature and volume of global marine sediments

info:eu-repo/semantics/publishe

Spatially and temporally variable sulfur cycling in shallow-sea hydrothermal vents, Milos, Greece

Shallow-sea hydrothermal systems are ideal for studying the relative contributions to sedimentary sulfur archives from ambient sulfur-utilizing microbes and from fluxes of hydrothermally derived sulfur. Here we present data from a vent field in Palaeochori Bay, Milos, Greece using a suite of biogeochemical analytical tools that captured both spatial and temporal variability in biotic and abiotic sulfur cycling. Samples were collected along a transect from a seagrass meadow to an area of active venting. The abundance and isotopic composition of sulfide captured in situ, together with geochemistry from sedimentary porewaters and the overlying water column and solid phase sulfide minerals, record evidence of ephemeral activity of microbial sulfate reduction as well as sulfide oxidation. The sulfur and oxygen isotope composition of porewater sulfates indicate active sulfate reduction within the transition zone between the vents and seagrass, rapid recycling of biologically produced sulfide within non-vent sediments, and reoxidation of abiotic sulfide within the vent field. A phylogenetic survey of sediments also indicates the pervasive presence of a suite of putative sulfur-metabolizing bacteria, including sulfate reducers and sulfide oxidizers, many of which can utilize intermediate valence sulfur compounds. The isotopic composition of pyrite in these sediments consistently records a microbially influenced signature (δ 34 S py of −4.4 to −10.8‰) relative to the hydrothermal endmember (δ 34 S ~ + 2.5‰), independent of distance from the vent source. The narrow range of pyrite δ 34 S across sediments with a highly variable hydrothermal influence suggests that physical mixing (e.g., by storm events) homogenizes the distribution of biogenic and hydrothermal Fe-sulfides throughout the region, overprinting the spatially and temporally variable interplay between biological and hydrothermal sulfur cycling in these environments. © 2018 Elsevier B.V

Metastable Iron (Mono)sulfides in the Shallow-Sea Hydrothermal Sediments of Milos, Greece

Metastable iron sulfides are involved in a series of biotic and abiotic processes in the marine environment, including the mineralization of organic matter. However, naturally occurring metastable iron (mono)sulfide minerals are rarely reported in marine sediments, and current information about their formation and characteristics comes from synthetic sulfides. Here, we studied sulfur speciation and mineralogy in a submarine surface core (0-22 cm depth) from an active, shallow-sea hydrothermal system (Milos, Greece) that is dominated by sulfur-metabolizing microorganisms. Geochemical analysis results showed S-Fe-As enrichment in the bottom layers of the core, which were further characterized using a suite of techniques. Powder X-ray diffraction and Synchrotron-based μ-X-ray diffraction did not show crystalline Fe-S compounds whereas scanning electron microscopy and Synchrotron-based X-ray fluorescence mapping indicated the presence of Fe-S(-As) phases and sulfur particles. Sulfur microspeciation by X-ray absorption near-edge structure spectroscopy showed a mixture of oxidation states, including organic sulfur species, indicative of active sulfur biogeochemical cycling. Ultimately, transmission electron microscopy was used for the identification of the Fe-S mineral assemblage in the samples that included arsenic-bearing pyrite and the metastable mackinawite, monoclinic pyrrhotite and greigite, alongside elemental sulfur nanoparticles. Previous studies on the mineralogy of Milos hydrothermal sediments omitted the presence of metastable iron sulfides, that were up to now known to form in marine sediments from estuaries and anoxic/euxinic basins. Our results highlight that the use of standard microscopic, spectroscopic and diffraction techniques may overlook the presence of metastable iron sulfides in natural samples. Considering that metastable iron sulfides are implicated in critical biogeochemical processes for the marine ecosystems, their role in sulfur, iron, and carbon cycling in modern and ancient marine sediments might be underrated. © 2022 American Chemical Society. All rights reserved